Who knows what Scott Paterno was disputing but it wasn't a NY Times report.
BTW, an over-looked issue that the NY Times addresses (see linked article above) is that a source has contradicted Paterno's statement on Sunday that he wasn't given specific details by McQueary about what he witnessed in 2002.
"In explaining his actions, Mr. Paterno has publicly said he was not told of the graphic nature of a suspected 2002 assault by Jerry Sandusky, a former assistant, of a young boy in the football building’s showers. Mr. Paterno said the graduate assistant who reported the assault, Mike McQueary, said only that something disturbing had happened that was perhaps sexual in nature.
But on Tuesday, a person with knowledge of Mr. McQueary’s version of events called Mr. Paterno’s claim into question. The person said Mr. McQueary had told those in authority the explicit details of what he saw, including in his face-to-face meeting with Mr. Paterno the day after the incident."