By your logic the NFL is incredibly stupid. I'm sure there are years when the 2 best teams are in the same conference or even the same division. Too bad. Win your division. Win your conference. Play in the Super Bowl. Should be the same in BCS. Win your conference or an at-large bid. Win your side of the bracket. Play in the NC game. Rigging the system to get the "two best teams" is incredibly stupid. It just perpetuates and amplifies the lack of any semblance of parity. To any disinterested observer it must be comical.
You know, you could take this year's line up of BCS teams, put them in a reasonably formatted sixteen-team playoff, and 'Bama or UGA might still win the NC, but make them runt the gauntlet of a real playoff for crissake. They MIGHT get knocked off along the way. That possibility would generate interest and ratings I believe. It would certainly be more entertaining than the current sham. If UGA wins after that, I can live with it.